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📊 covid: merge categories #3300

Merged
merged 4 commits into from
Sep 17, 2024
Merged

📊 covid: merge categories #3300

merged 4 commits into from
Sep 17, 2024

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lucasrodes
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@lucasrodes lucasrodes commented Sep 17, 2024

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owidbot commented Sep 17, 2024

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Login: ssh owid@staging-site-seattle-flu

chart-diff: ✅
  • 2/2 reviewed charts
    • Modified: 1/1
    • New: 1/1
data-diff: ❌ Found differences
= Dataset garden/health/2024-09-05/seattle_pathogens
  = Table seattle_pathogens
    ~ Dim country
+       + New values: 574 / 3969 (14.46%)
                date    organism country
          2019-10-21 Influenza A Seattle
          2022-10-31 Influenza A Seattle
          2022-12-19 Influenza A Seattle
          2023-06-19 Influenza A Seattle
          2024-04-15 Influenza A Seattle
    ~ Dim date
+       + New values: 574 / 3969 (14.46%)
          country    organism       date
          Seattle Influenza A 2019-10-21
          Seattle Influenza A 2022-10-31
          Seattle Influenza A 2022-12-19
          Seattle Influenza A 2023-06-19
          Seattle Influenza A 2024-04-15
    ~ Dim organism
+       + New values: 574 / 3969 (14.46%)
          country       date    organism
          Seattle 2019-10-21 Influenza A
          Seattle 2022-10-31 Influenza A
          Seattle 2022-12-19 Influenza A
          Seattle 2023-06-19 Influenza A
          Seattle 2024-04-15 Influenza A
    ~ Column percentage (changed metadata, new data)
+       + description_short: |-
-       - description_short: The share of specimens detected with respiratory pathogen << organism >>.
        ? ^^^^^^^^^^^^^^^^^^
+       +   The share of specimens detected with respiratory pathogen << organism >>. <% if organism == 'RSV' %>
        ? ^                                                                          +++++++++++++++++++++++++++
+       +   This includes RSV A and RSV B.
+       +   <% elif organism == 'Influenza A' %>
+       +   This includes Influenza A H1N1 and H3N2.
+       +   <% endif %>

+       + New values: 574 / 3969 (14.46%)
          country       date    organism  percentage
          Seattle 2019-10-21 Influenza A    0.000000
          Seattle 2022-10-31 Influenza A    0.796813
          Seattle 2022-12-19 Influenza A   19.375000
          Seattle 2023-06-19 Influenza A    1.680672
          Seattle 2024-04-15 Influenza A    3.571429
    ~ Column present (changed metadata, new data)
+       + description_short: |-
-       - description_short: The number of specimens detected with respiratory pathogen << organism >>.
        ? ^^^^^^^^^^^^^^^^^^
+       +   The number of specimens detected with respiratory pathogen << organism >>. <% if organism == 'RSV' %>
        ? ^                                                                           +++++++++++++++++++++++++++
+       +   This includes RSV A and RSV B.
+       +   <% elif organism == 'Influenza A' %>
+       +   This includes Influenza A H1N1 and H3N2.
+       +   <% endif %>

+       + New values: 574 / 3969 (14.46%)
          country       date    organism  present
          Seattle 2019-10-21 Influenza A        0
          Seattle 2022-10-31 Influenza A        2
          Seattle 2022-12-19 Influenza A       31
          Seattle 2023-06-19 Influenza A        2
          Seattle 2024-04-15 Influenza A        1
    ~ Column tested (changed metadata, new data)
-       - title: Total number of specimens tested for pathogen <<organism>> present
        ?                                                                  --------
+       + title: Total number of specimens tested for presence of pathogen <<organism>>
        ?                                            ++++++++++++
-       -   The number of specimens tested to detect the respiratory pathogen << organism >>. Some of these specimens may have tested positive for the pathogen, while others (or all of them) may have tested negative.
+       +   The number of specimens tested to detect the respiratory pathogen << organism >>. Some of these specimens may have tested positive for the pathogen, while others (or all of them) may have tested negative. <% if organism == 'RSV' %>
        ?                                                                                                                                                                                                               +++++++++++++++++++++++++++
+       +   This includes RSV A and RSV B.
+       +   <% elif organism == 'Influenza A' %>
+       +   This includes Influenza A H1N1 and H3N2.
+       +   <% endif %>

+       + New values: 574 / 3969 (14.46%)
          country       date    organism  tested
          Seattle 2019-10-21 Influenza A    <NA>
          Seattle 2022-10-31 Influenza A    <NA>
          Seattle 2022-12-19 Influenza A    <NA>
          Seattle 2023-06-19 Influenza A    <NA>
          Seattle 2024-04-15 Influenza A    <NA>
+ + Table seattle_pathogens_month
+   + Column present_month
+   + Column tested_month
+   + Column percentage_month


Legend: +New  ~Modified  -Removed  =Identical  Details
Hint: Run this locally with etl diff REMOTE data/ --include yourdataset --verbose --snippet

Automatically updated datasets matching weekly_wildfires|excess_mortality|covid|fluid|flunet|country_profile|garden/ihme_gbd/2019/gbd_risk are not included

Edited: 2024-09-17 15:33:52 UTC
Execution time: 14.05 seconds

@lucasrodes lucasrodes changed the title 🚧 Draft PR for branch seattle-flu 📊 covid: merge categories Sep 17, 2024
@lucasrodes lucasrodes marked this pull request as ready for review September 17, 2024 16:48
@lucasrodes lucasrodes merged commit 73cae62 into master Sep 17, 2024
8 checks passed
@lucasrodes lucasrodes deleted the seattle-flu branch September 17, 2024 16:48
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2 participants